Posts

Setting up and connecting to a SQL database

This blog post may be a bit redundant, considering how ubiquitous SQL databases are today, but I thought I'd write a summary of what I've accomplished so far with configuring a simple MySQL database on my home LAN.

I haven't messed around with SQL too much, having never come across so much data that a database was required to organize it in a more manageable way. However, at some point in the future I know I'll come across this problem, so it's probably best to start learning the toolkit now.

For starters, I have a VM running a Ubuntu 18 server instance that's hosting a mysql-server install. Next, I've configured the SQL server to listen on 192.168.1.60, as opposed to just localhost, which is the bridged IP of the VM. EDIT 12/10: I've since edited the configuration file to allow incoming connections from any IP by setting this value to 0.0.0.0. That way I can connect to it on port 3306 from any other machine. You may find these configuration options in…

Working with an AMD WX 3100 Pro and (Py)?OpenCL

This is a bit of a recap on getting something useful out of my AMD Radeon Pro WX 3100 after toiling with drivers for a couple of days.

After following the installation process for ROCm, I discovered this GPU isn't supported as of yet.

However, I was able to get something out of clinfo (which you also have to install) after following laanwj's blog post about OpenCL. For Python there's a wrapper module, pyopencl, that provides a wrapper via pybind11. $ clinfo Number of platforms 1 Platform Name Clover Platform Vendor Mesa Platform Version OpenCL 1.1 Mesa 18.0.5 Platform Profile FULL_PROFILE Platform Extensions cl_khr_icd Platform Extensions function suffix MESA Platform Name Clover Number of devices 1…

Another crack at the RX algorithm in Python

At the request of a commentor on a former post, I decided to write an updated Python implementation of the RX algorithm with NumPy (which actually out-performs my naive C implementation). You can download and install the module from GitHub.

At the heart of it all is the Mahalanobis distance metric,
\begin{align}d(\,\tilde{X},X_{i}\,)&=\sqrt{(\,X_{i}-\tilde{X}\,)^{\text{T}}\,\Omega\,(\,X_{i}-\tilde{X}\,)},\end{align}where \(X_{i}\) is some vector in the image's space (many times RGB), \(\tilde{X}\) is the average (or approximately average) vector along each channel, and \(\Omega=\Sigma^{-1}\) is the precision matrix.

I've found it's not really necessary to have the exact precision matrix in practice, so we may reduce the overhead of computing an average vector and covariance if the image is largely one color.  This computation can be neatly expressed with numpy.einsum.

Scaling an image to an appropriate number of pixels for your project

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Today I'm writing a Python module that works with image data (check back in a few days for my post about it) and I wanted to arrive at the optimal dimensions an image must be to have a certain number of pixels.

For example, if I want to see how fast my algorithm is for, say, 1 million RGB vectors, then I want to scale my example image to 1 megapixel.

In this post I'm working with an image that has dimensions \((3840,2160)\), or a size of about 8.3 million pixels. But what should the \(X\) and \(Y\) dimensions of my image be then, if I want it to be as close to 1 million pixels as possible?
First Attempt Let's write a Python function that preserves the aspect ratio of an image's dimensions and allows us to vary its size. from typing import Tuple def scale(X: int, Y: int, factor: float =1.0) -> Tuple[float, Tuple[float, float]]: """ Scale our image's dimensions by some factor, preserving aspect ratio. """ X_, Y_ = fa…

A few takeaways from PyCon, 2018

There were a lot of interesting talks this year, and although I didn't attend nearly as many talks as I would have liked, I got a lot out of those that I did.
Performance Python First and foremost has to be Jake Vanderplas' talk, Performance Python: Seven Strategies for Optimizing Your Numerical Code. My first takeaway from his talk is line_profiler, which is a command line tool that's intended to be used to profile your Python functions' execution time, line-by-line.

For example, let's use code from my last post and apply the convert function to a single image. We use line_profiler in the terminal by adding the @profile decorator to the function head (no imports necessary).
@profile def convert(im: np.array, transform: np.array) -> np.array: """ Convert an image array to another colorspace """ dimensions = len(im.shape) axes = im.shape[:dimensions-1] # Create a new array (respecting mutability) new_ = np.empty(…

Color space conversion

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I've been intrigued by Steven Pigeon's series on color spaces lately and wanted to give color space conversion a try in Python. In the following script I've reproduced several of the color spaces Pigeon mentions in the first five parts of the series.

Using NumPy this operation is almost trivial, but I added a few fun tidbits as well. Also note that, as I've mentioned before, PEP 465 has added the infix matrix multiplication operator @ to Python 3.5+.
#! /usr/bin/env python3.6 # -*- coding: utf-8 -*- # vim:fenc=utf-8 """ Convert colorspaces. """ from typing import List from tqdm import tqdm from functools import reduce from operator import mul import numpy as np import imageio import os ## Colorspaces Kodak_1 = np.array([[ 1, 1, 1], [-1, -1, 1], [ 1, -1, -1]]) Kodak_YCC = np.array([[ 0.299, 0.587, 0.114], [-0.299, -0.587, 0.886], [ 0.701, -0.58…

Fold a String into an Int type

While working my way through (Sullivan, Goerzen & Stewart, 2009), I came across the problem of converting a String to an Int using folds. This isn't that difficult a problem, but because I'm still a beginner to Haskell, I had to think about it for a few days.

Finally, I came up with the following (unsafe) solution using foldl.
import Data.Char (digitToInt) asInt :: String -> Int asInt [] = 0 asInt (x:xs) | x == '-' = (-1) * asInt xs | otherwise = sum $ foldl helper [] $ zip (reverse [0..(length (x:xs) - 1)]) (x:xs) where helper :: [Int] -> (Int,Char) -> [Int] helper totalList (order,digit) = digitToInt digit * 10 ^ order : totalList I separated the state of summing from the rest of the problem, using the fold to  'loop' over the list and raise each digit to the appropriate magnitude based on its position, just as one would in an imperative language. Thus, I believe this is a hybrid solution that uses both recursion and a f…

Binary Search in Haskell and Python 3.6

I've been learning a lot about Haskell lately, so I decided to write my own implementation of binary search after coming across Jacob Sheehy's implementation. In the following I wanted a nicer functional interface to locating a value in an entire list. I also wanted it to be safe, using the Maybe monad in the event a value doesn't exist or the list is empty.
-- A humble implementation of binary search in Haskell binarySearch :: Int -> [Int] -> Maybe Int binarySearch _ [] = Nothing binarySearch value list = search 0 ((length list) - 1) where search :: Int -> Int -> Maybe Int search i j sublist = do if i > j then Nothing else do let midPoint = ((i + j) `quot` 2) currentValue = list !! midPoint -- compare outputs one of LT, GT, EQ case compare value currentValue of LT -> search i (midPoint - 1) GT -> search (midPoint + 1) j EQ -> Just midPoint main :: IO() …

A string hash problem

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Earlier this week I was looking through various software developer jobs and I came across this one by Fog Creek. They've posted the following interesting problem, which is the subject of this post.
Find a 9 letter string of characters that contains only letters from acdegilmnoprstuw such that the `hash(the_string)` is 945924806726376 if `hash` is defined by the following pseudo-code: Int64 hash (String s) { Int64 h = 7 String letters = "acdegilmnoprstuw" for (Int32 i = 0; i < s.length; i++) { h = (h * 37 + letters.indexOf(s[i])) } return h } I had no clue what to do when I first read this. In fact, my first attempt was to brute force my way through \({16}^{9}\sim 68\cdot {10}^9\) possibilities. Obviously we need a better method than that.
from typing import Optional from itertools import product alphabet = 'acdegilmnoprstuw' def hash(string: str) -> int: "&quo…

Setting up ath10k

This post is meant as a simple reminder of how to get WIFI working in the event that I have to reinstall Debian on my Lenovo Flex 5, which appears to be a newer firmware.

First, run mkdir -p /lib/firmware/ath10k to create the subdirectory ath10k if it doesn't already exist. Now copy the QCA6174 directory from this GitHub repo there and rename the files QCA6174/hw*/firmware-5.bin* to just firmware*.bin.

Now reboot, and whoala! WIFI works.

Unfortunately, there still appears to be a few fails while loading the firmware, which I'll have to look into at some point. But for now, this is a quick fix to get things moving.
$ sudo dmesg | grep ath10k [ 2.186725] ath10k_pci 0000:03:00.0: pci irq msi oper_irq_mode 2 irq_mode 0 reset_mode 0 [ 2.463755] ath10k_pci 0000:03:00.0: firmware: failed to load ath10k/pre-cal-pci-0000:03:00.0.bin (-2) [ 2.463756] ath10k_pci 0000:03:00.0: Direct firmware load for ath10k/pre-cal-pci-0000:03:00.0.bin failed with error -2 [ 2.463765] ath10k_…